De Gruyter and Princeton Mathematics eBook Collection

De Gruyter and Princeton Mathematics eBook Collection logo

The Library recently purchased the De Gruyter and Princeton Mathematics eBook Collection. This collection consists of titles from nine well-known series published by Princeton University Press and De Gruyter – including books from the very respected series Annals of Mathematics Studies back to 1940! These series include highly-cited works from influential mathematicians such as Church, Halmos, Milnor, Polya, and Weyl, among many others.

The nine series are:

  • Annals of mathematics studies
  • De Gruyter expositions in mathematics
  • De Gruyter series in nonlinear analysis and applications
  • De Gruyter studies in mathematical physics
  • De Gruyter studies in mathematics
  • Mathematical notes
  • Princeton mathematical series
  • Princeton series in applied mathematics
  • Radon series on computational and applied mathematics

Ingenuity Pathway Analysis (IPA) workshop

Ingenuity Pathway Analysis

A representative from Qiagen will offer a hands-on training workshop on using IPA to interpret expression data (including RNA-seq).

Date: Thursday, Nov. 9
Time: 1:30-4:30 pm
Location: Bioscience Library Training Room, 2101 Valley Life Sciences Building

You are invited to participate in this free training, and are encouraged to bring your own laptop or use the computer workstations in our training room.

Please register if you are interested in attending.

The workshop will cover how to:

  • Format, upload your data, and launch an analysis
  • Identify likely pathways that are expressed
  • Find causal regulators and their directional effect on gene functions and diseases
  • Build pathways, make connections between entities, and overlay multiple datasets on a pathway or network
  • Understand the affected biological processes
  • Perform a comparison analysis: utilize a heat map to easily visualize trends across multiple time points or samples

Questions? Please contact Elliott Smith (esmith@library.berkeley.edu)


Reaxys 2.0 Migration

 

Logo for Reaxys Database

Reaxys is a web-based tool for the retrieval of chemistry information and data from published literature, including journals and patents.Chemists at Berkeley are active users of Reaxys, doing 1000’s of searches/month!

Elsevier has rolled out a new version of Reaxys (Reaxys 2.0) that has a number of enhanced features, including:

  1.       An increasingly simple user interface.  The opening page has spaces to (a) type in the search query in a search bar or (b) type in the name of the structure or draw the structure.
  2.       Search functions using the querylets to increase the specificity of the search and reduces the time that the user has to filter the results post search.
  3.       Search functions that contain auto suggest. Similarly it also searches for singular/plural and synonyms
  4.       Using Boolean operators (obviously one of Elsevier’s strengths)
  5.       Listing hits in the initial screen (post search).  No secondary search needed.
  6.       A big increase in the number of searchable Asian patents

The migration is Reaxys 2.0 is ongoing, but migration should be completed by November 30, 2017. Soon UCB users will be directed to the new interface, but will continue to have the option to use the old interface for the foreseeable future.


UPDATE: Elsevier Data Publishing Requirements

Last spring, we posted about data publishing requirements from Elsevier, Springer/Nature, and AAAS. At the time, Elsevier was the most lenient on their data publishing policies and used language that was suggestive and encouraging of data publishing. As of September 5th, 2017, that is no longer the case. Elsevier has signed on to the Transparency and Openness Guidelines (TOP) through the Center for Open Science. We talk and write a lot about transparency, openness, and sharing in science; however, there is a disconnect between the conversations and the daily workflows and practice of scientists. I was once told, after giving a workshop on data sharing, that I was an idealist trying to preach to realists. In order to close that gap, we need more publishers, like Elsevier, to make the ideal a reality, and enforce strict guidelines on data sharing and publishing.

Elsevier Logo

 

Let’s take a look at the 5 new data sharing requirements, which will be implemented for 1800 of Elsevier’s titles:

Option A:  you are encouraged to

  • deposit your research data in a relevant repository
  • cite this dataset in your article

Option B: you are encouraged to

  • deposit your research data in a relevant repository
  • cite this dataset in your article
  • link this dataset in your article
  • If you can’t do this, be prepared to explain why!

Option C: you are required to

  • deposit your research data in a relevant repository
  • cite this dataset in your article
  • link this dataset in your article
  • if you can’t do this, be prepared to explain why!

Option D: you are required to

  • deposit your research data in a relevant repository
  • cite this dataset in your article
  • link this dataset in your article

Option E: you are required to

  • deposit your research data in a relevant repository
  • cite this dataset in your article
  • link this dataset in your article
  • peer reviewers will review the data prior to publication

The new Elsevier policy is similar in nature to Springer/Nature with their tiered system of requirements. It’s important to check with your individual journal to see which option it falls under. Ideally, you will always follow option E, where you make your data openly available, cited, linked, and provide the proper amount of metadata to go through the peer review process or be reused by another researcher.

 

If you have any questions about how to enrich the metadata of your dataset, or where to deposit your research data, please email researchdata@berkeley.edu!

 

 


Workshops on Scopus for literature searching and research impact

Want to make the most of our subscription to Scopus to improve your literature searching or evaluate your research impact? Attend one of our upcoming Scopus workshops! The Library is hosting two back-to-back workshops on September 28 to provide tips on using this large abstract and citation database covering the peer-reviewed literature across disciplines.

Scopus banner image

Advanced Literature Searching with Scopus
September 28 | 2-3 p.m. | Bechtel Engineering Center, Kresge Engineering Library Training Room 110MD

Want to improve your literature searching and save yourself time? This workshop will cover advanced searching with Scopus, a large abstract and citation database covering the peer-reviewed literature: scholarly journals, books, and conference proceedings. The database covers publications in science, technology, medicine, social sciences, arts, and humanities. Come learn useful tips and techniques for finding relevant publications for your literature reviews.

Scopus Tools for Assessing Research Impact
September 28 | 3-4 p.m. | Bechtel Engineering Center, Kresge Engineering Library Training Room 110MD

This workshop will cover tools and techniques available in the citation database Scopus for maximizing and assessing your research impact. Topics to be covered include: citation analysis for authors, comparing journals with CiteScore, linking your Scopus Author ID to your ORCID ID, and using PlumX metrics in Scopus.

We encourage you to register online for these workshops but drop-ins will also be welcome as space allows.


Maps & More: Hamilton!

Please mark your calendars for the first Maps and More pop-up exhibit of the semester!
Friday, September 22, 11 am – noon
Earth Sciences & Map Library, 50 McCone Hall
Hamilton, in Maps informational poster

You’ve listened to the musical, now put some names to places with maps related to Alexander Hamilton’s life and exploits. This month’s Maps and More collections show-and-tell event is offered in coordination with the On the Same Page program. Featuring maps and atlases from the Earth Sciences & Map Library collection, this exhibit helps put some geographic context to key events in Hamilton, from his birth in the West Indies to his years in Philadelphia and New York and his deadly duel on the banks of the Hudson.

 
We’re delighted to have history graduate student Nicole Viglini guest curating this pop-up exhibit. Nicole’s research interests include themes of race, culture, class, and gender in early and nineteenth-century America and the Caribbean.
 
We hope to see you there!
Susan Powell
Sam Teplitzky
 
ps: Save the date for next month’s Maps and More on Wednesday, Oct. 18, 11 am – noon with mapmaker Stace Wright of Eureka Cartography!

Data Practices and Publishing Workshop Series

On Tuesday, September 5th and Tuesday, September 12th, the Kresge Engineering Library and Research Data Management will be holding a series of two data management workshops designed for researchers who are in the midst navigating the research data lifecycle.

research data lifecycle

https://www.jisc.ac.uk/guides/research-data-management

During the first workshop, Efficient Research Data Practices, we’ll tear apart the above cycle and identify where each attendee currently falls in the data lifecycle. We’ll address pitfalls, tips, and tools for each step of the process that includes creating data management plans; setting up secure storage for the active data management phase; and how to prepare your data for publication while adhering to publisher and funder requirements.

 

The second workshop, Data Sharing: Publishing and Archiving, will take a deep dive into metadata creation and preparing data for publication and archiving. We’ll discuss why data publication is so important and we’ll identify individual publisher requirements for datasets. Daniella Lowenberg, formerly a publication manager for PLoS, and now the Research Data Specialist for the California Digital Library will be joining us.

 

Please register for the workshops by clicking on the below links and we look forward to seeing you!

Efficient Research Data Practices: September 5, 4:00 – 5:00, Kresge Engineering Library – 110MD Bechtel Engineering Center

Data Sharing: Publishing and Archiving: September 12, 4:00 – 5:00, Kresge Engineering Library – 110MD Bechtel Engineering Center


Advanced PubMed workshop

PubMed logo

Want to make your searches for biomedical information more effective and efficient? The Library’s Life and Health Sciences Division is holding a hands-on workshop on advanced features of PubMed, including:

  • How to use filters to focus search results on specific article types, publication dates and more
  • How to add field tags to find articles by author, title, journal, and other criteria
  • How Medical Subject Headings (MeSH) can help you find additional relevant information
  • How to use My NCBI to save searches, set up alerts, and display results in your preferred format
  • How PubMed links to information in other NCBI resources

Location: Bioscience Library Training Room, 2101 VLSB
Date: Tuesday, September 5, repeated Wednesday, September 6
Time: 12 – 1 pm

No pre-registration is required; all are welcome.

Questions? Please contact Elliott Smith at esmith@library.berkeley.edu

For additional workshops on NCBI bioinformatics tools, citation managers, searching Scopus, writing and collaboration tools, data visualization, productivity tools and techniques, and other topics, please see the Science Libraries Events Calendar.